The Inhibition Effect of Photo-Cross-Linking between Probes in Photo-Induced Double Duplex Invasion DNA.
Kenzo Fujimoto, Ayumu Hirano, Yasuha Watanabe, Ami Shimabara, Shigetaka Nakamura
Chembiochem : a European journal of chemical biology, 22, 24, 3402-3405, 2021

Photocrosslinking of DNA using 4-methylpyranocarbazole nucleoside with thymine base selectivity.
Jun-Ichi Mihara, Kenzo Fujimoto
Organic & biomolecular chemistry, 19, 45, 9860-9866, 2021

The effect of 5-substituent in cytosine to the photochemical C to U transition in DNA strand
Kenzo Fujimoto, Wan Licheng, Shigetaka Nakamura
Bioorganic and Medicinal Chemistry Letters, 35, 127812-127812, 2021

Reducing control alphabet size for the control of right linear grammars with unknown behaviors.
Nobuya Kimoto, Shigetaka Nakamura, Ken Komiya, Kenzo Fujimoto, Satoshi Kobayashi
Theor. Comput. Sci., 862, 193-213, 2021

Fluorescence In Situ Hybridization of 16S rRNA in Escherichia coli Using Multiple Photo-Cross-Linkable Probes
Kenzo Fujimoto, Nanami Watanabe
ChemistrySelect, 5, 46, 14670-14676, 2020

Complete Photochemical Regulation of 8–17 DNAzyme Activity by Using Reversible DNA Photo-crosslinking
Yasuha Watanabe, Kenzo Fujimoto
ChemBioChem, 21, 22, 3244-3248, 2020

Photochemical RNA Editing of C to U by Using Ultrafast Reversible RNA Photo-crosslinking in DNA/RNA Duplexes
Shigetaka Nakamura, Kanako Ishino, Kenzo Fujimoto
ChemBioChem, 21, 21, 3067-3070, 2020

Effect of linker length on photo-cross-linking position mediated by click chemistry via [2 + 2] photocycloaddition†.
Kenzo Fujimoto, Kenta Ishida, Li Xue, Shigetaka Nakamura
Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology, 19, 6, 776-782, 2020

Effect of linker length on photo-cross-linking position mediated by click chemistry: Via [2 + 2]photocycloaddition
Kenzo Fujimoto, Kenta Ishida, Li Xue, Shigetaka Nakamura
Photochemical and Photobiological Sciences, 19, 6, 776-782, 2020

改変型OPA反応と¹⁹F NMRを利用したアミノ酸の同時一斉分析
坂本隆, QIU Zhiyong, 稲垣美侑, 藤本健造
日本化学会春季年会講演予稿集(CD-ROM), 92, 2, 1669-1673, 2020

Reducing control alphabet size for the control of right linear grammars with unknown behaviors
Nobuya Kimoto, Shigetaka Nakamura, Ken Komiya, Kenzo Fujimoto, Satoshi Kobayashi
Theoretical Computer Science, 862, 193-213, 2020

RNA fluorescence in situ hybridization hybridisation using photo-cross-linkable beacon probes containing pyranocarbazole in living E. coli
K. Fujimoto, Misaki Hashimoto, Nanami Watanabe, Shigetaka Nakamura
Bioorganic and Medicinal Chemistry Letters, 29, 16, 2173-2177, 2019

Monotonically controlling right linear grammars with unknown behaviors to output a target string
Nobuya Kimoto, Ken Komiya, Kenzo Fujimoto, Satoshi Kobayashi
Theoretical Computer Science, 777, 387-408, 2019

DNA photo-cross-linking using a pyranocarbazole-modified oligodeoxynucleotide with a d-threoninol linker
Kenzo Fujimoto, Tsubasa Yamaguchi, Takahiro Inatsugi, Masahiko Takamura, Isao Ishimaru, Ayako Koto, Shigetaka Nakamura
RSC Advances, 9, 53, 30693-30697, 2019

Strong Inhibitory Effects of Antisense Probes on Gene Expression through Ultrafast RNA Photocrosslinking
Kenzo Fujimoto, Hung Yang-Chun, Shigetaka Nakamura
Chemistry - An Asian Journal, 14, 11, 1912-1916, 2019

Reversible photo-cross-linking of the GCN4 peptide containing 3-cyanovinylcarbazole amino acid to double-stranded DNA
Zhiyong Qiu, Shigetaka Nakamura, Kenzo Fujimoto
Organic and Biomolecular Chemistry, 17, 25, 6277-6283, 2019

Photo-cross-linkable artificial nucleic acid: Synthesis and properties of 3-cyanovinylcarbazole-modified nucleic acids and its photo-induced gene-silencing activity in cells
Takashi Sakamoto, Kenzo Fujimoto
Synthesis of Therapeutic Oligonucleotides, 171-186, 2018

Ultra-acceleration of Photochemical Cytosine Deamination by Using a 5′-Phosphate-Substituted Oligodeoxyribonucleotide Probe Containing a 3-Cyanovinylcarbazole Nucleotide at Its 5′-End
Siddhant Sethi, Nozomi Honda, Licheng Wan, Shigetaka Nakamura, Kenzo Fujimoto
ChemBioChem, 19, 21, 2257-2261, 2018

DNA Photo-cross-linking Using Pyranocarbazole and Visible Light
Kenzo Fujimoto, Shinobu Sasago, Junichi Mihara, Shigetaka Nakamura
Organic Letters, 20, 10, 2802-2805, 2018

Multiplexed detection of nucleic acids using ¹⁹F NMR chemical shift changes based on DNA photo-cross-linking of 3-vinylcarbazole derivatives
Shigetaka Nakamura, Yasuharu Takashima, Kenzo Fujimoto
Organic and Biomolecular Chemistry, 16, 6, 891-894, 2018

Study of photochemical cytosine to uracil transition via ultrafast photo-cross-linking using vinylcarbazole derivatives in duplex DNA
Siddhant Sethi, Shigetaka Nakamura, Kenzo Fujimoto
Molecules, 23, 4, -, 2018

DNA photocrosslinking using 3-vinylcarbazole derivatives in two-color detection of methylcytosine
Shigetaka Nakamura, Ryo Nakajima, Kenzo Fujimoto
Chemistry Letters, 47, 7, 875-877, 2018

Disassembly-driven signal turn-on probes for bimodal detection of DNA with ¹⁹ F NMR and fluorescence
Takashi Sakamoto, Daisaku Hasegawa, Kenzo Fujimoto
Organic and Biomolecular Chemistry, 16, 39, 7157-7162, 2018

A multiplex RNA quantification method to determine the absolute amounts of mRNA without reverse transcription
Maasa Yokomori, Osamu Gotoh, Yasufumi Murakami, Kenzo Fujimoto, Akira Suyama
Analytical Biochemistry, 539, 96-103, 2017

Photochemical Acceleration of DNA Strand Displacement by Using Ultrafast DNA Photo-crosslinking
Shigetaka Nakamura, Hirokazu Hashimoto, Satoshi Kobayashi, Kenzo Fujimoto
ChemBioChem, 18, 20, 1984-1989, 2017

Effect of substitution of photo-cross-linker in photochemical cytosine to uracil transition in DNA.
Siddhant Sethi, Yasuharu Takashima, Shigetaka Nakamura, Kenzo Fujimoto
Bioorganic & medicinal chemistry letters, 27, 16, 3905-3908, 2017

Characterization of human telomere RNA G-quadruplex structures in vitro and in living cells using 19F NMR spectroscopy
Hong Liang Bao, Takumi Ishizuka, Takashi Sakamoto, Kenzo Fujimoto, Tamayo Uechi, Naoya Kenmochi, Yan Xu
Nucleic Acids Research, 45, 9, 5501-5511, 2017

Application of cDNA-displayed single domain antibodies for FAL
Yoshie Hashimoto, Yuki Mochizuki, Shigefumi Kumachi, Taku Kashiyama, Yuji Kamikubo, Kenzo Fujimoto, Naoto Nemoto, Takashi Sakurai
JOURNAL OF PHARMACOLOGICAL SCIENCES, 133, 3, S262-S262, 2017

Effect of substitution of photo-cross-linker in photochemical cytosine to uracil transition in DNA
Siddhant Sethi, Yasuharu Takashima, Shigetaka Nakamura, Kenzo Fujimoto
Bioorganic and Medicinal Chemistry Letters, 27, 16, 3905-3908, 2017

Development of ¹⁹F-NMR chemical shift detection of DNA B-Z equilibrium using ¹⁹F-NMR
S. Nakamura, H. Yang, C. Hirata, F. Kersaudy, K. Fujimoto
Organic and Biomolecular Chemistry, 15, 24, 5109-5111, 2017

Effect of nucleobase change on cytosine deamination through DNA photo-cross-linking reaction: Via 3-cyanovinylcarbazole nucleoside
Siddhant Sethi, Minako Ooe, Takashi Sakamoto, Kenzo Fujimoto
Molecular BioSystems, 13, 6, 1152-1156, 2017

Double duplex invasion of DNA induced by ultrafast photo-cross-linking using 3-cyanovinylcarbazole for antigene methods
Shigetaka Nakamura, Hayato Kawabata, Kenzo Fujimoto
Chemical Communications, 53, 54, 7616-7619, 2017

Wash-free RNA FISH using a photoresponsive beacon probe via photochemical crosslinking
Shigetaka Nakamura, Chinami Kano, Kenzo Fujimoto
Chemistry Letters, 46, 12, 1711-1713, 2017

Phototriggered sequence-specific DNA transportation into liposomes using ultrafast DNA photocrosslinking
Shigetaka Nakamura, Harunobu Uehara, Takashi Hasegawa, Kenzo Fujimoto
Chemistry Letters, 46, 12, 1839-1841, 2017

Sequence-Specific DNA Photosplitting of Crosslinked DNAs Containing the 3-Cyanovinylcarbazole Nucleoside by Using DNA Strand Displacement
Shigetaka Nakamura, Hayato Kawabata, Kenzo Fujimoto
ChemBioChem, 17, 16, 1499-1503, 2016

Reversible Gel–Sol Transition of a Photo-Responsive DNA Gel
Daisuke Kandatsu, Keitel Cervantes-Salguero, Ibuki Kawamata, Shogo Hamada, Shin ichiro M. Nomura, Kenzo Fujimoto, Satoshi Murata
ChemBioChem, 17, 12, 1118-1121, 2016

Simultaneous detection of single-nucleotide polymorphisms in a DNA bulge structure using a fluorine-modified bisbenzimide derivative
Takashi Sakamoto, Daisaku Hasegawa, Kenzo Fujimoto
Analyst, 141, 4, 1214-1217, 2016

Photo-Cross-Linking Reaction in Nucleic Acids: Chemistry and Applications
Sakamoto Takashi, Fujimoto Kenzo
Modified Nucleic Acids, 145-157, 2016

Effect of 5-substitution of uracil base in DNA photocrosslinking using 3-cyanovinylcarbazole
Shigetaka Nakamura, Hayato Kawabata, Hodaka Muramatsu, Kenzo Fujimoto
Chemistry Letters, 45, 8, 887-889, 2016

UVA-responsive anticancer prodrugs based on photoinduced electron injection into oligonucleotide having 5-Halouracils
Kenzo Fujimoto, Mirei Furusawa, Shigetaka Nakamura, Takashi Sakamoto
Chemistry Letters, 45, 9, 1078-1080, 2016

RNA fluorescence in situ hybridization using 3-cyanovinylcarbazole modified oligodeoxyribonucleotides as photo-cross-linkable probes
Kenzo Fujimoto, Kei Toyosato, Shigetaka Nakamura, Takashi Sakamoto
Bioorganic and Medicinal Chemistry Letters, 26, 21, 5312-5314, 2016

Changing Blue Fluorescent Protein to Green Fluorescent Protein Using Chemical RNA Editing as a Novel Strategy in Genetic Restoration
Luyen T. Vu, Thanh T.K. Nguyen, Shafiul Alam, Takashi Sakamoto, Kenzo Fujimoto, Hitoshi Suzuki, Toshifumi Tsukahara
Chemical Biology and Drug Design, 86, 5, 1242-1252, 2015

A versatile puromycin-linker using cnvK for high-throughput in vitro selection by cDNA display
Yuki Mochizuki, Takeru Suzuki, Kenzo Fujimoto, Naoto Nemoto
Journal of Biotechnology, 212, 174-180, 2015

Critical Effect of Base Pairing of Target Pyrimidine on the Interstrand Photo-Cross-Linking of DNA via 3-Cyanovinylcarbazole Nucleoside
Takashi Sakamoto, Minako Ooe, Kenzo Fujimoto
Bioconjugate Chemistry, 26, 8, 1475-1478, 2015

Photo-cross-linking using trifluorothymidine and 3-cyanovinylcarbazole induced a large shifted ¹⁹F MR signal
Shigetaka Nakamura, Kenzo Fujimoto
Chemical Communications, 51, 59, 11765-11768, 2015

Fluorine-modified bisbenzimide derivative as a molecular probe for bimodal and simultaneous detection of DNAs by ¹⁹F NMR and fluorescence
Takashi Sakamoto, Daisaku Hasegawa, Kenzo Fujimoto
Chemical Communications, 51, 42, 8749-8752, 2015

DNA photo-cross-linking using 3-cyanovinylcarbazole modified oligonucleotide with threoninol linker
Takashi Sakamoto, Yuya Tanaka, Kenzo Fujimoto
Organic Letters, 17, 4, 936-939, 2015

Rapid photopolymerization of oligodeoxynucleotides by 3-cyanovinylcarbazole mediated DNA photocrosslinking
Shigetaka Nakamura, Kenzo Fujimoto
Journal of Photopolymer Science and Technology, 27, 4, 485-490, 2014

Photo-regulation of constitutive gene expression in living cells by using ultrafast photo-cross-linking oligonucleotides
Takashi Sakamoto, Atsuo Shigeno, Yuichi Ohtaki, Kenzo Fujimoto
Biomaterials Science, 2, 9, 1154-1157, 2014

Short oligonucleotide prodrug having 5-fluoro and 5-iodouracil inhibits the proliferation of cancer cells in a photo-responsive manner
Kenzo Fujimoto, Yu Ki Takematsu, Atsuo Shigeno, Mirei Furusawa, Takashi Sakamoto
Bioorganic and Medicinal Chemistry Letters, 24, 16, 3736-3738, 2014

Creation of DNA array structure equipped with heat resistance by ultrafast photocrosslinking
Shigetaka Nakamura, Kenzo Fujimoto
Journal of Chemical Technology and Biotechnology, 89, 7, 1086-1090, 2014

Details of the ultrafast DNA photo-cross-linking reaction of 3-cyanovinylcarbazole nucleoside: Cis-trans isomeric effect and the application for SNP-based genotyping
Kenzo Fujimoto, Asuka Yamada, Yoshinaga Yoshimura, Tadashi Tsukaguchi, Takashi Sakamoto
Journal of the American Chemical Society, 135, 43, 16161-16167, 2013

Geometric effect on the photocrosslinking reaction between 3-cyanovinylcarbazole nucleoside and pyrimidine base in DNA/RNA heteroduplex
Kenzo Fujimoto, Satomi Kishi, Takashi Sakamoto
Photochemistry and Photobiology, 89, 5, 1095-1099, 2013

Quick and reversible photocrosslinking reaction of 3-cyanovinylcarbazole nucleoside in a DNA triplex
Kenzo Fujimoto, Hiroki Yoshinaga, Yasumasa Yoshio, Takashi Sakamoto
Organic and Biomolecular Chemistry, 11, 31, 5065-5068, 2013

Quick, selective and reversible photocrosslinking reaction between 5-methylcytosine and 3-cyanovinylcarbazole in DNA double strand
Kenzo Fujimo, Kaoru Konishi-Hiratsuka, Takashi Sakamoto
International Journal of Molecular Sciences, 14, 3, 5765-5774, 2013

Diamine Derivatives Accelerate Photochemical C -> U Transition in DNA Double Strand
Kenzo Fujimoto, Daiki Futamura, Takashi Sakamoto
CHEMISTRY LETTERS, 42, 3, 289-291, 2013

3P124 光応答性分子ロボット構築のためのDNAマイクロカプセルの設計と作製(05A.核酸:構造・物性,ポスター,日本生物物理学会年会第51回(2013年度))
Tsuganezawa Yuichi, Morita Masamune, Hamada Shogo, Nomura Shin-ichiro M., Fujimoto Kenzo, Murata Satoshi, Takinoue Masahiro
生物物理, 53, 1, S232-, 2013

Quick regulation of mRNA functions by a few seconds of photoirradiation
Atsuo Shigeno, Takashi Sakamoto, Yoshinaga Yoshimura, Kenzo Fujimoto
Organic and Biomolecular Chemistry, 10, 38, 7820-7825, 2012

Regulation of gene expression by photocrosslinking oligonucleotide containing of carbazole
Atsuo Shigeno, Sakamoto Takashi, Kenzo Fujimoto
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 243, -, 2012

Template directed reversible photochemical ligation for DNA nanotechnology
Shigetaka Nakamura, Kenzo Fujimoto
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 243, -, 2012

Development about photochemical DNA and RNA crosslinking via 3-cyanovinylcarbazole
Satomi Kishi, Daiki Futamura, Kaoru Hiratsuka, Takashi Sakamoto, Kenzo Fujimoto
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 243, -, 2012

Specific and reversible photochemical labeling of plasmid DNA using photoresponsive oligonucleotides containing 3-cyanovinylcarbazole
Kenzo Fujimoto, Kaoru Hiratsuka-Konishi, Takashi Sakamoto, Tomoko Ohtake, Ken Ichi Shinohara, Yoshinaga Yoshimura
Molecular BioSystems, 8, 2, 491-494, 2012

Template directed reversible photochemical ligation of oligodeoxynucleotides
Shigetaka Nakamura, Shinzi Ogasawara, Shigeo Matuda, Isao Saito, Kenzo Fujimoto
Molecules, 17, 1, 163-178, 2012

5-Methylcytosine selective photoligation using photoresponsive oligonucleotides containing Various 5-Vinyl-2″-deoxyuridines Having an Aromatic Group
Sakamoto T, Ami T, Fujimoto K
Chemistry Letters, 41, 1, 47-49, 2012

Stabilization of DNA nanostructures by photo-cross-linking
Miho Tagawa, Koh Ichiroh Shohda, Kenzo Fujimoto, Akira Suyama
Soft Matter, 7, 22, 10931-10934, 2011

Construction of branched DNA for SNP determination on glass-chip using photochemical ligation
Minhaz Uddin Ahmed, Yoshinaga Yoshimura, M. Mosharraf Hossain, Eiichi Tamiya, Kenzo Fujimoto
Biochip Journal, 5, 3, 206-213, 2011

Signal turn-on probe for nucleic acid detection based on ¹⁹F nuclear magnetic resonance
Takashi Sakamoto, Yu Ki Shimizu, Jun Sasaki, Hikaru Hayakawa, Kenzo Fujimoto
Bioorganic and Medicinal Chemistry Letters, 21, 1, 303-306, 2011

Possibility of genetic restoration for a disease treatment
Toshifumi Tsukahara, Yu Ooka, Shafiul Alam, Hitoshi Suzuki, Kenzo Fujimoto
2011 4th International Conference on Modeling, Simulation and Applied Optimization, ICMSAO 2011, -, 2011

Development of a Potassium Ion Sensor for ¹⁹F Magnetic Resonance Chemical Shift Imaging Based on Fluorine-labeled Thrombin Aptamer
Takashi Sakamoto, Hikaru Hayakawa, Kenzo Fujimoto
Chemistry Letters, 40, 7, 720-721, 2011

5-Methylcytosine selective photoligation using photoresponsive oligonucleotides containing various 5-vinyl-2′-deoxyuridines having an aromatic group
Sakamoto, Takashi, Ami, Takehiro, Fujimoto, Kenzo
Chemistry Letters, 41, 1, 47-49, 2011

Site-specific photochemical RNA editing
Kenzo Fujimoto, Kaoru Konishi-Hiratsuka, Takashi Sakamoto, Yoshinaga Yoshimura
Chemical Communications, 46, 40, 7545-7547, 2010

Site-specific cytosine to uracil transition by using reversible DNA photo-crosslinking
Kenzo Fujimoto, Kaoru Konishi-Hiratsuka, Takashi Sakamoto, Yoshinaga Yoshimura
ChemBioChem, 11, 12, 1661-1664, 2010

1P346 光化学的DNA操作によるDNAコンピューティング(その他,第48回日本生物物理学会年会)
Ogasawara Shinji, Sakamoto Takashi, Nakamura Shigetaka, Fujimoto Kenzo
生物物理, 50, 2, S81-, 2010

2P139 周期骨格DNAアレイを用いた大規模二次元非周期パターンの構築(核酸-相互作用・複合体,第48回日本生物物理学会年会)
Ara Kohsuke, Tagawa Miho, Shohda Koh-ichiroh, Fujimoto Kenzo, Suyama Akira
生物物理, 50, 2, S106-S107, 2010

Surface-enhanced Raman spectroscopy for facile DNA detection using gold nanoparticle aggregates formed via photoligation
Nguyen T.B. Thuy, Ryoko Yokogawa, Yoshinaga Yoshimura, Kenzo Fujimoto, Mikio Koyano, Shinya Maenosono
Analyst, 135, 3, 595-602, 2010

Photoreversible DNA end capping for the formation of hairpin structures
Yoshinaga Yoshimura, Hajime Okada, Kenzo Fujimoto
Organic and Biomolecular Chemistry, 8, 7, 1523-1526, 2010

A new approach for reversible RNA photocrosslinking reaction: Application to sequence-specific RNA selection
Yoshinaga Yoshimura, Tomoko Ohtake, Hajime Okada, Kenzo Fujimoto
ChemBioChem, 10, 9, 1473-1476, 2009

WHO 1st consultation on the development of a global biodosimetry laboratories network for radiation emergencies (BioDoseNet).
William F Blakely, Zhanat Carr, May Chin-May Chu, Renu Dayal-Drager, Kenzo Fujimoto, Michael Hopmeir, Ulrike Kulka, Patricia Lillis-Hearne, Gordon K Livingston, David C Lloyd, Natalie Maznyk, Maria Del Rosario Perez, Horst Romm, Yoshio Takashima, Phillipe Voisin, Ruth C Wilkins, Mitsuaki A Yoshida
Radiation research, 171, 1, 127-39, 2009

A selective and sensitive detection of SNP between rice cultivars by using DNA photoligation.
Yoshinaga Yoshimura, Hajime Okada, Tomoko Ohtake, Tadashi Tsukaguchi, Kenzo Fujimoto
Nucleic acids symposium series (2004), 53, 199-200, 2009

Development of a rapid and reversible photocrosslinking of RNA.
Yoshinaga Yoshimura, Tomoko Ohtake, Hajime Okada, Kenzo Fujimoto
Nucleic acids symposium series (2004), 53, 197-198, 2009

A photochemical detection of methylcytosine by using hydrophobic interaction.
Takehiro Ami, Masayuki Ogino, Yuuta Taya, Yumiko Takemura, Kenzo Fujimoto
Nucleic acids symposium series (2004), 53, 203-204, 2009

Detection of methylcytosine by DNA photoligation via hydrophobic interaction of the alkyl group
Masayuki Ogino, Yuuta Taya, Kenzo Fujimoto
Organic and Biomolecular Chemistry, 7, 15, 3163-3167, 2009

Photochemical ligation of DNA probe prepared in click chemistry
Takehiro Ami, Yoshinaga Yoshimura, Tomoya Matsuzaki, Kenzo Fujimoto
Journal of Photopolymer Science and Technology, 22, 2, 267-272, 2009

SNP genotyping by DNA photoligation: Application to SNP detection of genes from food crops
Yoshinaga Yoshimura, Tomoko Ohtake, Hajime Okada, Takehiro Ami, Tadashi Tsukaguchi, Kenzo Fujimoto
Science and Technology of Advanced Materials, 10, 3, 034603-034603, 2009

Click chemistry as an efficient method for preparing a sensitive DNA probe for photochemical ligation
Takehiro Ami, Kenzo Fujimoto
ChemBioChem, 9, 13, 2071-2074, 2008

Autonomous DNA computing machine based on photochemical gate transition
Shinzi Ogasawara, Takehiro Ami, Kenzo Fujimoto
Journal of the American Chemical Society, 130, 31, 10050-10051, 2008

C8-alkynyl- and alkylamino substituted 2′-deoxyguanosines: a universal linker for nucleic acids modification
Yoshio Saito, Katsuhiko Matsumoto, Subhendu Sekhar Bag, Shinzi Ogasawara, Kenzo Fujimoto, Kazuo Hanawa, Isao Saito
Tetrahedron, 64, 16, 3578-3588, 2008

A light-controlled reversible DNA photoligation via carbazole-tethered 5-carboxyvinyluracil
Kenzo Fujimoto, Hideaki Yoshino, Takehiro Ami, Yoshinaga Yoshimura, Isao Saito
Organic Letters, 10, 3, 397-400, 2008

DNA Photoligation in two-color detection of DNA point mutation
Takehiro Ami, Genki Ozaki, Yoshinaga Yoshimura, Kenzo Fujimoto
Chemistry Letters, 37, 2, 134-135, 2008

Cy3-3-acylcholine: A fluorescent analogue of acetylcholine for single molecule detection
Kenzo Fujimoto, Yoshinaga Yoshimura, Makoto Ihara, Kazuhiko Matsuda, Yuko Takeuchi, Takaaki Aoki, Toru Ide
Bioorganic and Medicinal Chemistry Letters, 18, 3, 1106-1109, 2008

Photochemical site-specific mutation of 5-methylcytosine to thymine
Takashi Matsumura, Masayuki Ogino, Kango Nagayoshi, Kenzo Fujimoto
Chemistry Letters, 37, 1, 94-95, 2008

1P-306 DNAメモリ技術を用いた金基板上でのDNA空間分布の記録法の開発(バイオエンジニアリング,第46回日本生物物理学会年会)
Kim Gun Woo, Shohda Kohichiroh, Fujimoto Kenzo, Suyama Akira
生物物理, 48, S69-, 2008

Effective synthesis of photosensitive oligodeoxynucleotides.
Masayuki Ogino, Yuta Taya, Kenzo Fujimoto
Nucleic acids symposium series (2004), 52, 395-396, 2008

Development of template-directed reversible DNA photocrosslinking.
Yoshinaga Yoshimura, Genki Ozaki, Kenzo Fujimoto
Nucleic acids symposium series (2004), 52, 423-424, 2008

Sensitive DNA probe for photochemical ligation prepared in click chemistry.
Takehiro Ami, Hiroshi Matsumura, Kenzo Fujimoto
Nucleic acids symposium series (2004), 52, 247-248, 2008

Synthesis of a photoresponsive alpha-dideoxyuridine triphosphate derivative.
Yukari Nitta, Masayuki Ogino, Yoshinaga Yoshimura, Kenzo Fujimoto
Nucleic acids symposium series (2004), 52, 293-294, 2008

Highly selective detection of 5-methylcytosine using photochemical ligation
Masayuki Ogino, Yuuta Taya, Kenzo Fujimoto
Chemical Communications, 45, 5996-5998, 2008

Photosensitized cleavage of the thymine dimer in DNA via carbazole nucleoside
Yoshinaga Yoshimura, Yuta Taya, Hiroshi Matsumura, Kenzo Fujimoto
Journal of Photopolymer Science and Technology, 21, 4, 525-530, 2008

Ultrafast reversible photo-cross-linking reaction: Toward in situ DNA manipulation
Yoshinaga Yoshimura, Kenzo Fujimoto
Organic Letters, 10, 15, 3227-3230, 2008

Heat-resistant DNA tile arrays constructed by template-directed photoligation through 5-carboxyvinyl-2′-deoxyuridine
Miho Tagawa, Koh Ichiroh Shohda, Kenzo Fujimoto, Tadashi Sugawara, Akira Suyama
Nucleic Acids Research, 35, 21, e140-, 2007

Nonenzymatic parallel DNA logic circuits
Shinzi Ogasawara, Yoshiaki Kyoi, Kenzo Fujimoto
ChemBioChem, 8, 13, 1520-1525, 2007

光応答性人工核酸を用いた遺伝子操作および遺伝子解析
藤本 健造
有機合成化学協会誌 : JOURNAL OF Synthetic Organic Chemistry JAPAN, 65, 7, 709-714, 2007

Replication of cyclobutane pyrimidine dimer analogue by Ex Taq DNA polymerase
Masayuki Ogino, Daisuke Okamura, Kenzo Fujimoto
Science and Technology of Advanced Materials, 8, 4, 318-322, 2007

1P315 フォトライゲーションにより安定化された自己組織化DNAアレイ(バイオエンジニアリング、計測,口頭発表,第45回日本生物物理学会年会)
田川 美穂, 庄田 耕一郎, 藤本 建造, 陶山 明
生物物理, 47, S102-, 2007

Photochemical transition of 5-methylcytosine to thymine by DNA photoligation.
Takashi Matsumura, Yoshinaga Yoshimura, Kenzo Fujimoto
Nucleic acids symposium series (2004), 51, 233-234, 2007

Photochemical synthesis of R-shaped DNA via 5-cyanovinyldeoxyuridine.
Masayuki Ogino, Kenzo Fujimoto
Nucleic acids symposium series (2004), 51, 231-232, 2007

Parallel processable light-driven DNA logic gate.
Shinzi Ogasawara, Takehiro Ammi, Kenzo Fujimoto
Nucleic acids symposium series (2004), 51, 235-236, 2007

Effective two-color SNP typing based on photoligation.
Takehiro Ami, Kenzo Fujimoto
Nucleic acids symposium series (2004), 51, 325-326, 2007

Reversible photopadlocking on double-stranded DNA
Kenzo Fujimoto, Shigeo Matsuda, Yoshinaga Yoshimura, Takehiro Ami, Isao Saito
Chemical Communications, 28, 2968-2970, 2007

Highly sequence specific RNA terminal labeling by DNA photoligation
Yoshinaga Yoshimura, Yuuki Noguchi, Kenzo Fujimoto
Organic and Biomolecular Chemistry, 5, 1, 139-142, 2007

Sequence specific interstrand photocrosslinking for effective SNP typing
Takehiro Ami, Katsuya Ito, Yoshinaga Yoshimura, Kenzo Fujimoto
Organic and Biomolecular Chemistry, 5, 16, 2583-2586, 2007

Highly efficient method for constructing a Single-stranded comb-like oligonucleotide via reversible photocrosslinking
Shinzi Ogasawara, Yoshinaga Yoshimura, Masayuki Hayashi, Isao Saito, Kenzo Fujimoto
Bulletin of the Chemical Society of Japan, 80, 11, 2124-2130, 2007

Photochemical synthesis of R-shaped DNA toward DNA recombination and processing in vitro
Masayuki Ogino, Kenzo Fujimoto
Angewandte Chemie - International Edition, 45, 43, 7223-7226, 2006

Highly selective and sensitive template-directed photoligation of DNA via 5-carbamoylvinyl-2′-deoxycytidine
Yoshinaga Yoshimura, Daisuke Okamura, Masayuki Ogino, Kenzo Fujimoto
Organic Letters, 8, 22, 5049-5051, 2006

SNP genotyping by using photochemical ligation
Shinzi Ogasawara, Kenzo Fujimoto
Angewandte Chemie - International Edition, 45, 27, 4512-4515, 2006

Template-directed DNA photoligation in rapid and selective detection of RNA point mutations
Yoshinaga Yoshimura, Yuuki Noguchi, Hideaki Sato, Kenzo Fujimoto
ChemBioChem, 7, 4, 598-601, 2006

Catalytic repair of a thymine dimer in DNA via carbazole nucleoside
Yoshinaga Yoshimura, Kenzo Fujimoto
Chemistry Letters, 35, 4, 386-387, 2006

Fluorescence labeling of DNA based on photochemical ligation
Takehiro Ami, Kenzo Fujimoto
Science and Technology of Advanced Materials, 7, 3, 249-254, 2006

1P372 Utilization of synthetic fluorescent agonist of nAChR for simultaneous optical and electrical single molecule measurements(14. Ion channels and receptors,Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
Takeuchi Yuko, Aoki Takaaki, Ihara Makoto, Yoshimura Yoshinaga, Fujimoto Kenzo, Matsuda Kazuhiko, Ide Toru
生物物理, 46, 2, S239-, 2006

2P490 Photochemical DNA Manipulation via artifitial photoresponsive base(51. New methods and tools (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
Fujimoto Kenzo, Yoshimura Yoshinaga, Ogasawara Shinzi, Ogino Masayuki, Ami Takehiro
生物物理, 46, 2, S418-, 2006

2P494 Photosensitized thymine dimer splitting in DNA via carbazole nucleoside(51. New methods and tools (II),Poster Session,Abstract,Meeting Program of EABS & BSJ 2006)
Yoshimura Yoshinaga, Kyoi Yoshiaki, Fujimoto Kenzo
生物物理, 46, 2, S419-, 2006

Template-directed DNA photoligation via 5-carbamoylvinvldeoxvcytidine
Yoshiaki Kyoi, Yoshinaga Yoshimura, Daisuke Okamura, Masayuki Ogino, Kenzo Fujimoto
Polymer Preprints, Japan, 55, 2, 4839-, 2006

Site-specific transition of cytosine analogue to uracil analogue via reversible DNA photoligation
Takashi Matsumura, Kenzo Fujimoto
Polymer Preprints, Japan, 55, 2, 4841-, 2006

Photoinduced repair of a thymine dimer in DNA via carbazole nucleoside.
Yoshinaga Yoshimura, Kenzo Fujimoto
Nucleic acids symposium series (2004), 50, 151-152, 2006

Photochemical DNA manipulation via phororesponsive base
Kenzo Fujimoto, Masayuki Ogino, Shinzi Ogasawara, Takehiro Ami, Yoshinaga Yoshimura
Polymer Preprints, Japan, 55, 2, 5300-5301, 2006

A novel photochemical ODN manipulation for post synthesis of branched nucleic acid
Shinzi Ogasawara, Kenzo Fujimoto
Polymer Preprints, Japan, 55, 2, 4842-, 2006

High selectivity detection of point mutation by DNA photochemical cross-linking.
Shinzi Ogasawara, Kenzo Fujimoto
Nucleic acids symposium series (2004), 50, 173-174, 2006

Nucleotide insertion opposite a cyclobutane pyrimidine dimer analogue caused from photoligation by a replicative DNA polymerase.
Masayuki Ogino, Daisuke Okamura, Yoshinaga Yoshimura, Kenzo Fujimoto
Nucleic acids symposium series (2004), 50, 125-126, 2006

Site-specific transition of cytosine to uracil via reversible DNA photoligation
Kenzo Fujimoto, Shigeo Matsuda, Yoshinaga Yoshimura, Takashi Matsumura, Masayuki Hayashi, Isao Saito
Chemical Communications, 30, 3223-3225, 2006

A novel method to synthesize versatile multiple-branched DNA (MB-DNA) by reversible photochemical ligation
Shinzi Ogasawara, Kenzo Fujimoto
ChemBioChem, 6, 10, 1756-1760, 2005

Template-directed DNA photoligation via α-5-cyanovinyldeoxyuridine
Ogino M, Yoshimura Y, Nakazawa A, Saito I, Fujimoto K
Organic Letters, 7, 14, 2853-2856, 2005

Photoinduced DNA end capping via N3-methyl-5-cyanovinyl- 2′-deoxyuridine
Fujimoto K, Yoshimura Y, Ikemoto T, Nakazawa A, Hayashi M, Saito I
Chemical Communications, 25, 3177-3179, 2005

Solution of a SAT problem on a photochemical DNA computer
Shinzi Ogasawara, Kenzo Fujimoto
Chemistry Letters, 34, 3, 378-379, 2005

Interstrand photocrosslinking of DNA via p-carbamoylvinyl phenol nucleoside
Yoshinaga Yoshimura, Yoshiaki Ito, Kenzo Fujimoto
Bioorganic and Medicinal Chemistry Letters, 15, 5, 1299-1301, 2005

Template-directed photoreversible ligation of DNA via 7-carboxyvinyl-7- deaza-2′-deoxyadenosine
Saito I, Miyauchi Y, Saito Y, Fujimoto K
Tetrahedron Letters, 46, 1, 97-99, 2005

Photochemical ODN manipulation based on reversible DNA photoligation mediated by modified photoresponsive base
Masayuki Ogino, Shinzi Ogasawara, Takehiro Ami, Yoshinaga Yoshimura, Kenzo Fujimoto
Journal of Photopolymer Science and Technology, 18, 4, 507-512, 2005

光応答性塩基を用いたRNA鋳型上でのDNA光連結
野口悠紀, 吉村嘉永, 藤本健造, 藤本健造
日本化学会講演予稿集, 86th, 49, 143-144, 2005

Application for photochemical DNA manipulation for construction of DNA nano-architecture
Kenzo Fujimoto
Polymer Preprints, Japan, 54, 2, 5079-5080, 2005

Photo-triggered ODN manipulation on DNA chip.
Shinzi Ogasawara, Kenzo Fujimoto
Nucleic acids symposium series (2004), 49, 145-146, 2005

The plenary session on the ICRP recommendations for the 21st century at IRPA-11, Madrid.
Geoffrey A M Webb, Sigurdur M Magnússon, Andre-Claude Lacoste, Simanga Alex Tsela, C Rick Jones, Kenzo Fujimoto, John Loy, Roger Coates
Journal of radiological protection : official journal of the Society for Radiological Protection, 24, 4, 413-22, 2004

Funding crisis at the Radiation Effects Research Foundation.
Mark P Little, Maria Blettner, John D Boice Jr, Bryn A Bridges, Elisabeth Cardis, Monty W Charles, Florent de Vathaire, Richard Doll, Kenzo Fujimoto, Dudley T Goodhead, Bernd Grosche, Per Hall, Wolfgang F Heidenreich, Peter Jacob, Suresh H Moolgavkar, Colin R Muirhead, Ohtsura Niwa, Herwig G Paretzke, Richard B Richardson, Jonathan M Samet, Yasuhito Sasaki, Roy E Shore, Tore Straume, Richard Wakeford
Journal of radiological protection : official journal of the Society for Radiological Protection, 24, 3, 195-7, 2004

3’末端側からのα-5-cyanovinyldeoxy-uridineを用いたDNA可逆的光連結反応
荻野雅之, 中沢暁夫, 斎藤烈, 藤本健造
日本化学会講演予稿集, 85th, 48, 77-78, 2004

相補鎖DNAに対する光クロスリンク反応
吉村嘉永, 池本忠好, 荻野雅之, 藤本健造
日本化学会講演予稿集, 84th, 48, 81-82, 2004

Genetic, Enzymatic, and Structural Analyses of Phenylalanyl-tRNA Synthetase from Thermococcus kodakaraensis KOD1
Kentaro Shiraki, Masao Tsuji, Yoshiteru Hashimoto, Kenzo Fujimoto, Shinsuke Fujiwara, Masahiro Takagi, Tadayuki Imanaka
Journal of Biochemistry, 134, 4, 567-574, 2003

光可逆的な連結反応によるDNAコンピューティング
吉村嘉永, 岸直人, 斉藤烈, 藤本健造
日本化学会講演予稿集, 84th, 3, 183-184, 2003

Sequence-specific protection of plasmid DNA from restriction endonuclease hydrolysis by pyrrole-imidazole-cyclopropapyrroloindole conjugates
K Fujimoto, H Iida, M Kawakami, T Bando, ZF Tao, H Sugiyama
NUCLEIC ACIDS RESEARCH, 30, 17, 3748-3753, 2002

Deoxyribonolactone formation in photoirradiation of 5-bromouracil-containing oligonucleotides by direct C1′ hydrogen abstraction
Fujimoto K, Ikeda Y, Ishihara S, Saito I
Tetrahedron Letters, 43, 12, 2243-2245, 2002

Conformation dependent DNA photoligation via sensitizer tethered 5-carboxyvinyluracil.
Kenzo Fujimoto, Hideaki Yoshino, Isao Saito
Nucleic acids research. Supplement (2001), 2, 155-156, 2002

Template directed DNA photoligation via substituted 2'-deoxyuridine.
K. Fujimoto, N. Ogawa, S. Matsuda, I. Saito
Nucleic acids research. Supplement (2001), 1, 185-186, 2001

Template directed photochemical synthesis of branched oligodeoxynucleotides via 5-carboxyvinyldeoxyuridine
Kenzo Fujimoto, Naoki Ogawa, Masayuki Hayashi, Shigeo Matsuda, Isao Saito
Tetrahedron Letters, 41, 49, 9437-9440, 2000

Reversible DNA photocircularization on triple helix: Effect of vinyl substituent on base stacking
K. Fujimoto, S. Matsuda, M. Hayashi, I. Saito
Tetrahedron Letters, 41, 41, 7897-7900, 2000

Template-directed reversible photocircularization of DNA via 5-vinyldeoxycytidine
Kenzo Fujimoto, Shigeo Matsuda, Naoki Ogawa, Masayuki Hayashi, Isao Saito
Tetrahedron Letters, 41, 33, 6451-6454, 2000

Direct strand cleavage via furanyladenine formation in anaerobic photoirradiation of 5-bromouracil-containing oligonucleotides
K. Fujimoto, Y. Ikeda, I. Saito
Tetrahedron Letters, 41, 33, 6455-6459, 2000

修飾塩基を用いてDNAを可逆的に光で連結する
藤本健造, 松田成夫, 斎藤烈
生体機能関連化学シンポジウム講演要旨集, 122, 23, 5646-5647, 2000

Reversible photoligation of DNA via 5-vinyldeoxyuridine.
K. Fujimoto, S. Matsuda, I. Saito
Nucleic acids symposium series, 42, 39-40, 1999

Sequence dependent photoreduction of 5-bromouracil-containing oligonucleotides via electron transfer
Kenzo Fujimoto, Hiroshi Sugiyama, Isao Saito
Tetrahedron Letters, 39, 15, 2137-2140, 1998

Preferential C1' hydrogen abstraction by a uracilyl radical in a DNA-RNA hybrid
Hiroshi Sugiyama, Kenzo Fujimoto, Isao Saito
Tetrahedron Letters, 38, 46, 8057-8060, 1997

Mechanistic investigation of photoreduction of 5-bromouracil-containing oligomers.
K. Fujimoto, S. Ishihara, I. Saito
Nucleic acids symposium series, 37, 89-90, 1997

Evidence for intrastrand C2′ hydrogen abstraction in photoirradiation of 5-halouracil-containing oligonucleotides by using stereospecifically C2′-deuterated deoxyadenosine
Sugiyama H, Fujimoto K, Saito I, Kawashima E, Sekine T, Ishido Y
Tetrahedron Letters, 37, 11, 1805-1808, 1996

Synthesis, structure and thermodynamic properties of 8-methylguanine-containing oligonucleotides: Z-DNA under physiological salt conditions
Hiroshi Sugiyama, Kiyohiko Kawai, Atsushi Matsunaga, Kenzo Fujimoto, Isao Saito, Howard Robinson, Andrew H.J. Wang
Nucleic Acids Research, 24, 7, 1272-1278, 1996

Stereospecific 1,2-Hydride Shift in Ribonolactone Formation in the Photoreaction of 2'-Iododeoxyuridine
Hiroshi Sugiyama, Kenzo Fujimoto, Isao Saito
Journal of the American Chemical Society, 117, 10, 2945-2946, 1995

Photoreaction of 5-bromouracil-containing DNA.
K. Fujimoto, H. Sugiyama, I. Saito
Nucleic acids symposium series, 34, 25-26, 1995

8-Methylguanine-containing oligonucleotides: useful structural constraint for Z form DNA.
K. Kawai, H. Sugiyama, K. Fujimoto, I. Saito
Nucleic acids symposium series, 34, 33-34, 1995

Non‐Twisted Tetrakis(organosilyl)ethene
Murakami M, Suginome M, Fujimoto K, Ito Y
Angewandte Chemie International Edition in English, 32, 10, 1473-1475, 1993

Stereoselective Intramolecular Bis-Silylation of Alkenes Promoted by a Palladium—Isocyanide Catalyst Leading to Polyol Synthesis
Murakami M, Suginome M, Fujimoto K, Nakamura H, Andersson P.G, Ito Y, Andersson P.G
Journal of the American Chemical Society, 115, 15, 6487-6498, 1993

Photoinduced Deoxyribose C2′ Oxidation in DNA. Alkali-Dependent Cleavage of Erythrose-Containing Sites via a Retroaldol Reaction
Sugiyama H, Tsutsumi Y, Fujimoto K, Saito I
Journal of the American Chemical Society, 115, 11, 4443-4448, 1993

Chemistry of oxidative DNA strand scission.
H. Sugiyama, K. Fujimoto, K. Hatano, K. Ohmori, I. Saito
Nucleic acids symposium series, 29, 125-126, 1993

Photochemical deoxyribose C2' oxidation in 5-iodouracil-containing hexanucleotide.
H. Sugiyama, E. Yamaguchi, K. Yamashita, K. Fujimoto, Y. Tsutsumi, I. Saito
Nucleic acids symposium series, 27, 7-8, 1992